PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g026210.1
Common NameMTR_5g026210
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family BES1
Protein Properties Length: 651aa    MW: 73855.9 Da    PI: 5.6215
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g026210.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822154.96.1e-48461931144
           DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspessl 94 
                      +g+g+k+++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGw+v++DGttyr+   p      +gs+a +s+es+ 
  Medtr5g026210.1  46 TGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWIVDADGTTYRQCLPPS----NMGSFAARSVESQP 135
                      589*******************************************************************766665....99***********9 PP

           DUF822  95 q.sslkssalaspvesysaspksssfpspssldsislasa.......asllpvlsvls 144
                      +  +l++++++  +e++s+ ++ ++  sp+s+ds+ +a+        as++p+ s+++
  Medtr5g026210.1 136 SgGTLRTCSVKETLENQSPGLRIDECVSPASIDSVLIAERdsknenyASVSPINSTDC 193
                      999********************************99988777766666666666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.4E-4847191IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514454.31E-158212646IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.5E-170215645IPR013781Glycoside hydrolase, catalytic domain
PfamPF013735.2E-86234617IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-57252266IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-57273291IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-57295316IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-57388410IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-57461480IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-57495511IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-57512523IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-57530553IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-57568590IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MKNTTEDATS TQDLDPQSDH SSDYLPQPQP RRLRGFAATA AGTNSTGKGK KEREKEKERT  60
KLRERHRRAI TSRMLAGLRQ YGNFPLPARA DMNDVLAALA REAGWIVDAD GTTYRQCLPP  120
SNMGSFAARS VESQPSGGTL RTCSVKETLE NQSPGLRIDE CVSPASIDSV LIAERDSKNE  180
NYASVSPINS TDCLEADQLM QDIHSGVHQN DFNCTPYVPV YIKLPAGIIN KFCQLMDPEG  240
IRQELIHIKS LNIDGVVVDC WWGIVEGWNS QKYEWSGYRE LFSIIREFKL NIQVVMAFHE  300
CGGNDSSDAL ISLPQWVLDI GKDNQDIFFT DREGRRNTEC LSWGIDKERV LKGRTGIEVY  360
FDMMRSFRTE FDDLFAEGMI DAVEIGLGAS GELKYPSFSE RMGWRYPGIG EFQCYDKYLQ  420
HSLRRAAKLR GHSFWARGPD NAGHYNSMPH ETGFFCERGD YDNYYGRFFL HWYSQTLVDH  480
ADNVLSLANL AFEGTKIIVK VPAVYWWYKT PSHAAELTAG YHNPTNQDGY SPVFEVLKKH  540
AVTMKFVCLG FNPSNQEANE SLVDPDGLSW QVLNSAWERG LITSGENAIF CYDRERYERL  600
IEMAKPRNDP DHRHFSFFVY QQPSLLQGNV CLSELDFFIK CMHGEMTGNL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12821760711401Beta-amylase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.80470.0flower| leaf| root| seed| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4630430.0CU463043.2 Medicago truncatula chromosome 5 clone mth2-85j9, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003612541.10.0beta-amylase-like protein
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLG7K5E90.0G7K5E9_MEDTR; Beta-amylase
STRINGGLYMA01G35500.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119023032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]